J3_7S1G_004

3D structure

PDB id

7S1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

wild-type Escherichia coli stalled ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S1G_004 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0811

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

7S1G|1|C|C|936
7S1G|1|C|A|937
7S1G|1|C|A|938
7S1G|1|C|G|939
*
7S1G|1|C|C|1344
7S1G|1|C|U|1345
7S1G|1|C|A|1346
7S1G|1|C|G|1347
7S1G|1|C|U|1348
7S1G|1|C|A|1349
7S1G|1|C|A|1350
*
7S1G|1|C|U|1372
7S1G|1|C|G|1373
7S1G|1|C|A|1374
7S1G|1|C|A|1375
7S1G|1|C|U|1376
7S1G|1|C|A|1377
7S1G|1|C|C|1378
7S1G|1|C|G|1379

Current chains

Chain C

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S7

Chain p

30S ribosomal protein S9