J3_7S1I_002
3D structure
- PDB id
- 7S1I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wild-type Escherichia coli stalled ribosome with antibiotic radezolid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CGG*CUUG*CG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7S1I_002 not in the Motif Atlas
- Homologous match to J3_5J7L_002
- Geometric discrepancy: 0.117
- The information below is about J3_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.5
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7S1I|1|C|C|586
7S1I|1|C|G|587
7S1I|1|C|G|588
*
7S1I|1|C|C|651
7S1I|1|C|U|652
7S1I|1|C|U|653
7S1I|1|C|G|654
*
7S1I|1|C|C|754
7S1I|1|C|G|755
Current chains
- Chain C
- 16S rRNA
Nearby chains
- Chain o
- 30S ribosomal protein S8
- Chain t
- 30S ribosomal protein S12
- Chain w
- 30S ribosomal protein S15
- Chain y
- 30S ribosomal protein S17
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