J3_7S1I_005

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S1I_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0739

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

7S1I|1|C|C|936
7S1I|1|C|A|937
7S1I|1|C|A|938
7S1I|1|C|G|939
*
7S1I|1|C|C|1344
7S1I|1|C|U|1345
7S1I|1|C|A|1346
7S1I|1|C|G|1347
7S1I|1|C|U|1348
7S1I|1|C|A|1349
7S1I|1|C|A|1350
*
7S1I|1|C|U|1372
7S1I|1|C|G|1373
7S1I|1|C|A|1374
7S1I|1|C|A|1375
7S1I|1|C|U|1376
7S1I|1|C|A|1377
7S1I|1|C|C|1378
7S1I|1|C|G|1379

Current chains

Chain C

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S7

Chain p

30S ribosomal protein S9