J3_7S1I_024

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

7S1I|1|I|A|2518, 7S1I|1|I|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S1I_024 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0809

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7S1I|1|I|C|2517
7S1I|1|I|A|2518
7S1I|1|I|U|2519
7S1I|1|I|C|2520
*
7S1I|1|I|G|2545
7S1I|1|I|U|2546
7S1I|1|I|A|2547
*
7S1I|1|I|U|2561
7S1I|1|I|U|2562
7S1I|1|I|U|2563
7S1I|1|I|A|2564
7S1I|1|I|A|2565
7S1I|1|I|A|2566
7S1I|1|I|G|2567

Current chains

Chain I

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain S

50S ribosomal protein L14