J3_7S1I_028
3D structure
- PDB id
- 7S1I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wild-type Escherichia coli stalled ribosome with antibiotic radezolid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- AUAGCUCAGUAGGUAGAGCAGGGG*CCCCGUGUCC*GU
- Length
- 36 nucleotides
- Bulged bases
- 7S1I|1|A|A|17, 7S1I|1|A|G|18, 7S1I|1|A|G|19, 7S1I|1|A|U|20, 7S1I|1|A|U|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7S1I|1|A|A|7
7S1I|1|A|U|8
7S1I|1|A|A|9
7S1I|1|A|G|10
7S1I|1|A|C|11
7S1I|1|A|U|12
7S1I|1|A|C|13
7S1I|1|A|A|14
7S1I|1|A|G|15
7S1I|1|A|U|16
7S1I|1|A|A|17
7S1I|1|A|G|18
7S1I|1|A|G|19
7S1I|1|A|U|20
7S1I|1|A|A|21
7S1I|1|A|G|22
7S1I|1|A|A|23
7S1I|1|A|G|24
7S1I|1|A|C|25
7S1I|1|A|A|26
7S1I|1|A|G|27
7S1I|1|A|G|28
7S1I|1|A|G|29
7S1I|1|A|G|30
*
7S1I|1|A|C|40
7S1I|1|A|C|41
7S1I|1|A|C|42
7S1I|1|A|C|43
7S1I|1|A|G|44
7S1I|1|A|U|45
7S1I|1|A|G|46
7S1I|1|A|U|47
7S1I|1|A|C|48
7S1I|1|A|C|49
*
7S1I|1|A|G|65
7S1I|1|A|U|66
Current chains
- Chain A
- tRNA(PHE)
Nearby chains
- Chain C
- Small subunit ribosomal RNA; SSU rRNA
- Chain I
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- 50S ribosomal protein L5
- Chain U
- 50S ribosomal protein L16
- Chain u
- 30S ribosomal protein S13
Coloring options: