J3_7S1I_036

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7S1I|1|I|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S1I_036 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0463

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7S1I|1|I|G|297
7S1I|1|I|G|298
7S1I|1|I|A|299
7S1I|1|I|A|300
7S1I|1|I|G|301
*
7S1I|1|I|C|316
7S1I|1|I|G|317
7S1I|1|I|C|318
7S1I|1|I|G|319
7S1I|1|I|A|320
7S1I|1|I|U|321
7S1I|1|I|A|322
7S1I|1|I|C|323
7S1I|1|I|A|324
7S1I|1|I|G|325
*
7S1I|1|I|C|337
7S1I|1|I|G|338
7S1I|1|I|U|339
7S1I|1|I|A|340
7S1I|1|I|C|341

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain c

50S ribosomal protein L24