J3_7S1J_016

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7S1J|1|I|U|686, 7S1J|1|I|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S1J_016 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0653

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7S1J|1|I|U|683
7S1J|1|I|G|684
7S1J|1|I|A|685
7S1J|1|I|U|686
7S1J|1|I|C|687
7S1J|1|I|U|688
7S1J|1|I|A|689
*
7S1J|1|I|U|773
7S1J|1|I|G|774
7S1J|1|I|G|775
*
7S1J|1|I|C|791
7S1J|1|I|A|792
7S1J|1|I|A|793
7S1J|1|I|A|794

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain k

50S ribosomal protein L34