J3_7S1J_023

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

7S1J|1|I|U|2334, 7S1J|1|I|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7S1J|1|I|C|2295
7S1J|1|I|U|2296
7S1J|1|I|A|2297
7S1J|1|I|A|2298
7S1J|1|I|U|2299
*
7S1J|1|I|A|2317
7S1J|1|I|G|2318
7S1J|1|I|G|2319
7S1J|1|I|U|2320
7S1J|1|I|U|2321
7S1J|1|I|A|2322
7S1J|1|I|G|2323
*
7S1J|1|I|C|2332
7S1J|1|I|A|2333
7S1J|1|I|U|2334
7S1J|1|I|A|2335
7S1J|1|I|A|2336
7S1J|1|I|G|2337

Current chains

Chain I

23S rRNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain N

50S ribosomal protein L5

Chain W

50S ribosomal protein L18

Chain e

50S ribosomal protein L27