3D structure

PDB id
7S1K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
UGAUCUA*UGG*CAAA
Length
14 nucleotides
Bulged bases
7S1K|1|I|U|686, 7S1K|1|I|A|792
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7S1K_016 not in the Motif Atlas
Homologous match to J3_5J7L_038
Geometric discrepancy: 0.0703
The information below is about J3_5J7L_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64189.2
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

7S1K|1|I|U|683
7S1K|1|I|G|684
7S1K|1|I|A|685
7S1K|1|I|U|686
7S1K|1|I|C|687
7S1K|1|I|U|688
7S1K|1|I|A|689
*
7S1K|1|I|U|773
7S1K|1|I|G|774
7S1K|1|I|G|775
*
7S1K|1|I|C|791
7S1K|1|I|A|792
7S1K|1|I|A|793
7S1K|1|I|A|794

Current chains

Chain I
23S rRNA

Nearby chains

Chain K
50S ribosomal protein L2
Chain k
50S ribosomal protein L34

Coloring options:


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