3D structure

PDB id
7S1K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
AUAGCUCAGUAGGUAGAGCAGGGG*CCCCGUGUCC*GU
Length
36 nucleotides
Bulged bases
7S1K|1|A|A|17, 7S1K|1|A|G|18, 7S1K|1|A|G|19, 7S1K|1|A|U|20, 7S1K|1|A|U|47
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7S1K|1|A|A|7
7S1K|1|A|U|8
7S1K|1|A|A|9
7S1K|1|A|G|10
7S1K|1|A|C|11
7S1K|1|A|U|12
7S1K|1|A|C|13
7S1K|1|A|A|14
7S1K|1|A|G|15
7S1K|1|A|U|16
7S1K|1|A|A|17
7S1K|1|A|G|18
7S1K|1|A|G|19
7S1K|1|A|U|20
7S1K|1|A|A|21
7S1K|1|A|G|22
7S1K|1|A|A|23
7S1K|1|A|G|24
7S1K|1|A|C|25
7S1K|1|A|A|26
7S1K|1|A|G|27
7S1K|1|A|G|28
7S1K|1|A|G|29
7S1K|1|A|G|30
*
7S1K|1|A|C|40
7S1K|1|A|C|41
7S1K|1|A|C|42
7S1K|1|A|C|43
7S1K|1|A|G|44
7S1K|1|A|U|45
7S1K|1|A|G|46
7S1K|1|A|U|47
7S1K|1|A|C|48
7S1K|1|A|C|49
*
7S1K|1|A|G|65
7S1K|1|A|U|66

Current chains

Chain A
tRNA(PHE)

Nearby chains

Chain C
Small subunit ribosomal RNA; SSU rRNA
Chain I
Large subunit ribosomal RNA; LSU rRNA
Chain N
50S ribosomal protein L5
Chain U
50S ribosomal protein L16
Chain u
30S ribosomal protein S13

Coloring options:

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