J3_7S9U_003

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7S9U|1|A|U|733

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S9U_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1617

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7S9U|1|A|U|730
7S9U|1|A|G|731
7S9U|1|A|A|732
7S9U|1|A|U|733
7S9U|1|A|C|734
7S9U|1|A|U|735
7S9U|1|A|A|736
*
7S9U|1|A|U|820
7S9U|1|A|A|821
7S9U|1|A|G|822
*
7S9U|1|A|C|838
7S9U|1|A|G|839
7S9U|1|A|A|840
7S9U|1|A|A|841

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain C

50S ribosomal protein L2

Chain E

50S ribosomal protein L4

Chain d

50S ribosomal protein L34