J3_7S9U_018

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUG*CUAACC*GAGACAG

Length

16 nucleotides

Bulged bases

7S9U|1|A|A|2227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S9U_018 not in the Motif Atlas

Homologous match to J3_4WF9_007

Geometric discrepancy: 0.2694

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7S9U|1|A|U|2120
7S9U|1|A|U|2121
7S9U|1|A|G|2122
*
7S9U|1|A|C|2225
7S9U|1|A|U|2226
7S9U|1|A|A|2227
7S9U|1|A|A|2228
7S9U|1|A|C|2229
7S9U|1|A|C|2230
*
7S9U|1|A|G|2251
7S9U|1|A|A|2252
7S9U|1|A|G|2253
7S9U|1|A|A|2254
7S9U|1|A|C|2255
7S9U|1|A|A|2256
7S9U|1|A|G|2257

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain C

50S ribosomal protein L2