J3_7SA4_006

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

7SA4|1|1|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SA4_006 not in the Motif Atlas

Homologous match to J3_8VTW_004

Geometric discrepancy: 0.1941

The information below is about J3_8VTW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.5

Basepair signature

cWW-cWW-cWW-cWW-tSH-F-F-F

Number of instances in this motif group

5

Unit IDs

7SA4|1|1|C|1298
7SA4|1|1|G|1299
7SA4|1|1|G|1300
7SA4|1|1|A|1301
7SA4|1|1|A|1302
7SA4|1|1|G|1303
*
7SA4|1|1|C|1625
7SA4|1|1|A|1626
7SA4|1|1|G|1627
*
7SA4|1|1|C|1639
7SA4|1|1|A|1640
7SA4|1|1|A|1641
7SA4|1|1|G|1642

Current chains

Chain 1

23S ribosomal RNA

Nearby chains