J3_7SA4_029

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7SA4|1|1|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SA4_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.054

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7SA4|1|1|G|297
7SA4|1|1|G|298
7SA4|1|1|A|299
7SA4|1|1|A|300
7SA4|1|1|G|301
*
7SA4|1|1|C|316
7SA4|1|1|G|317
7SA4|1|1|C|318
7SA4|1|1|G|319
7SA4|1|1|A|320
7SA4|1|1|U|321
7SA4|1|1|A|322
7SA4|1|1|C|323
7SA4|1|1|A|324
7SA4|1|1|G|325
*
7SA4|1|1|C|337
7SA4|1|1|G|338
7SA4|1|1|U|339
7SA4|1|1|A|340
7SA4|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24