J3_7SAE_004

3D structure

PDB id

7SAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR70P Class1 ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7SAE|1|A|U|733, 7SAE|1|A|G|839, 7SAE|1|A|A|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SAE_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1335

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7SAE|1|A|U|730
7SAE|1|A|G|731
7SAE|1|A|A|732
7SAE|1|A|U|733
7SAE|1|A|C|734
7SAE|1|A|U|735
7SAE|1|A|A|736
*
7SAE|1|A|U|820
7SAE|1|A|A|821
7SAE|1|A|G|822
*
7SAE|1|A|C|838
7SAE|1|A|G|839
7SAE|1|A|A|840
7SAE|1|A|A|841

Current chains

Chain A

RNA (2434-MER)

Nearby chains

Chain C

50S ribosomal protein L2

Chain E

50S ribosomal protein L4

Chain d

50S ribosomal protein L34