J3_7SS9_003

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7SS9|1|1|U|686, 7SS9|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SS9_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1785

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7SS9|1|1|U|683
7SS9|1|1|G|684
7SS9|1|1|A|685
7SS9|1|1|U|686
7SS9|1|1|C|687
7SS9|1|1|U|688
7SS9|1|1|A|689
*
7SS9|1|1|U|773
7SS9|1|1|G|774
7SS9|1|1|G|775
*
7SS9|1|1|C|791
7SS9|1|1|A|792
7SS9|1|1|A|793
7SS9|1|1|A|794

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2