J3_7SS9_020
3D structure
- PDB id
- 7SS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Late translocation intermediate with EF-G partially dissociated (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUUUAAUUC*GAAGAACCUUAC*GGCUAC
- Length
- 27 nucleotides
- Bulged bases
- 7SS9|1|3|A|975, 7SS9|1|3|G|976, 7SS9|1|3|A|977, 7SS9|1|3|A|978, 7SS9|1|3|U|1224
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7SS9_020 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.5644
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7SS9|1|3|G|954
7SS9|1|3|U|955
7SS9|1|3|U|956
7SS9|1|3|U|957
7SS9|1|3|A|958
7SS9|1|3|A|959
7SS9|1|3|U|960
7SS9|1|3|U|961
7SS9|1|3|C|962
*
7SS9|1|3|G|973
7SS9|1|3|A|974
7SS9|1|3|A|975
7SS9|1|3|G|976
7SS9|1|3|A|977
7SS9|1|3|A|978
7SS9|1|3|C|979
7SS9|1|3|C|980
7SS9|1|3|U|981
7SS9|1|3|U|982
7SS9|1|3|A|983
7SS9|1|3|C|984
*
7SS9|1|3|G|1221
7SS9|1|3|G|1222
7SS9|1|3|C|1223
7SS9|1|3|U|1224
7SS9|1|3|A|1225
7SS9|1|3|C|1226
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain N
- 30S ribosomal protein S9
- Chain O
- 30S ribosomal protein S10
- Chain R
- 30S ribosomal protein S13
- Chain S
- 30S ribosomal protein S14
- Chain X
- 30S ribosomal protein S19
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