3D structure

PDB id
7SS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Late translocation intermediate with EF-G partially dissociated (Structure V)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UG*UGUUG*CGCAA
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7SS9_023 not in the Motif Atlas
Homologous match to J3_6CZR_024
Geometric discrepancy: 0.1848
The information below is about J3_6CZR_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_04260.1
Basepair signature
cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

7SS9|1|3|U|1073
7SS9|1|3|G|1074
*
7SS9|1|3|U|1083
7SS9|1|3|G|1084
7SS9|1|3|U|1085
7SS9|1|3|U|1086
7SS9|1|3|G|1087
*
7SS9|1|3|C|1098
7SS9|1|3|G|1099
7SS9|1|3|C|1100
7SS9|1|3|A|1101
7SS9|1|3|A|1102

Current chains

Chain 3
16S rRNA

Nearby chains

Chain G
30S ribosomal protein S2
Chain J
30S ribosomal protein S5
Chain Z
30S ribosomal protein S21

Coloring options:


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