J3_7SS9_032

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGCCGUAG*CGC*GGAACU

Length

17 nucleotides

Bulged bases

7SS9|1|2|G|13, 7SS9|1|2|U|14, 7SS9|1|2|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SS9|1|2|G|9
7SS9|1|2|G|10
7SS9|1|2|C|11
7SS9|1|2|C|12
7SS9|1|2|G|13
7SS9|1|2|U|14
7SS9|1|2|A|15
7SS9|1|2|G|16
*
7SS9|1|2|C|68
7SS9|1|2|G|69
7SS9|1|2|C|70
*
7SS9|1|2|G|106
7SS9|1|2|G|107
7SS9|1|2|A|108
7SS9|1|2|A|109
7SS9|1|2|C|110
7SS9|1|2|U|111

Current chains

Chain 2

5S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain o

50S ribosomal protein L18

Chain v

50S ribosomal protein L25

Chain w

50S ribosomal protein L27