J3_7SS9_033
3D structure
- PDB id
- 7SS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Late translocation intermediate with EF-G partially dissociated (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 7SS9|1|3|C|48, 7SS9|1|3|A|50, 7SS9|1|3|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7SS9_033 not in the Motif Atlas
- Homologous match to J3_6CZR_058
- Geometric discrepancy: 0.2498
- The information below is about J3_6CZR_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.3
- Basepair signature
- cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7SS9|1|3|G|46
7SS9|1|3|C|47
7SS9|1|3|C|48
7SS9|1|3|U|49
7SS9|1|3|A|50
7SS9|1|3|A|51
7SS9|1|3|C|52
*
7SS9|1|3|G|359
7SS9|1|3|G|360
7SS9|1|3|G|361
7SS9|1|3|G|362
7SS9|1|3|A|363
7SS9|1|3|A|364
7SS9|1|3|U|365
7SS9|1|3|A|366
7SS9|1|3|U|367
*
7SS9|1|3|A|393
7SS9|1|3|G|394
7SS9|1|3|C|395
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 8
- Elongation factor G
- Chain Q
- 30S ribosomal protein S12
- Chain U
- 30S ribosomal protein S16
Coloring options: