J3_7SSD_003

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7SSD|1|1|U|686, 7SSD|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SSD_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1086

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7SSD|1|1|U|683
7SSD|1|1|G|684
7SSD|1|1|A|685
7SSD|1|1|U|686
7SSD|1|1|C|687
7SSD|1|1|U|688
7SSD|1|1|A|689
*
7SSD|1|1|U|773
7SSD|1|1|G|774
7SSD|1|1|G|775
*
7SSD|1|1|C|791
7SSD|1|1|A|792
7SSD|1|1|A|793
7SSD|1|1|A|794

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2