J3_7SSD_022

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

7SSD|1|3|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SSD_022 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.208

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

7SSD|1|3|C|990
7SSD|1|3|U|991
7SSD|1|3|U|992
7SSD|1|3|G|993
*
7SSD|1|3|C|1045
7SSD|1|3|A|1046
7SSD|1|3|G|1047
*
7SSD|1|3|C|1210
7SSD|1|3|U|1211
7SSD|1|3|U|1212
7SSD|1|3|A|1213
7SSD|1|3|C|1214
7SSD|1|3|G|1215

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 8

Elongation factor G

Chain S

30S ribosomal protein S14