J3_7SSD_034

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCUAAC*GGGGAAUAUUG*CAGC

Length

22 nucleotides

Bulged bases

7SSD|1|3|C|48, 7SSD|1|3|A|50, 7SSD|1|3|A|51, 7SSD|1|3|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SSD|1|3|G|46
7SSD|1|3|C|47
7SSD|1|3|C|48
7SSD|1|3|U|49
7SSD|1|3|A|50
7SSD|1|3|A|51
7SSD|1|3|C|52
*
7SSD|1|3|G|359
7SSD|1|3|G|360
7SSD|1|3|G|361
7SSD|1|3|G|362
7SSD|1|3|A|363
7SSD|1|3|A|364
7SSD|1|3|U|365
7SSD|1|3|A|366
7SSD|1|3|U|367
7SSD|1|3|U|368
7SSD|1|3|G|369
*
7SSD|1|3|C|392
7SSD|1|3|A|393
7SSD|1|3|G|394
7SSD|1|3|C|395

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 8

Elongation factor G

Chain Q

30S ribosomal protein S12

Chain U

30S ribosomal protein S16