J3_7SSD_039
3D structure
- PDB id
- 7SSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mid translocation intermediate with EF-G bound with GDP (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUAG*CAA*UGGGUCGGAGGUUCGAAUCCUCUC
- Length
- 31 nucleotides
- Bulged bases
- 7SSD|1|5|U|8, 7SSD|1|5|U|47, 7SSD|1|5|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7SSD|1|5|G|7
7SSD|1|5|U|8
7SSD|1|5|A|9
7SSD|1|5|G|10
*
7SSD|1|5|C|25
7SSD|1|5|A|26
7SSD|1|5|A|27
*
7SSD|1|5|U|43
7SSD|1|5|G|44
7SSD|1|5|G|45
7SSD|1|5|G|46
7SSD|1|5|U|47
7SSD|1|5|C|48
7SSD|1|5|G|49
7SSD|1|5|G|50
7SSD|1|5|A|51
7SSD|1|5|G|52
7SSD|1|5|G|53
7SSD|1|5|U|54
7SSD|1|5|U|55
7SSD|1|5|C|56
7SSD|1|5|G|57
7SSD|1|5|A|58
7SSD|1|5|A|59
7SSD|1|5|U|60
7SSD|1|5|C|61
7SSD|1|5|C|62
7SSD|1|5|U|63
7SSD|1|5|C|64
7SSD|1|5|U|65
7SSD|1|5|C|66
Current chains
- Chain 5
- tRNA Pro
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 8
- Elongation factor G
- Chain e
- 50S ribosomal protein L5
- Chain m
- 50S ribosomal protein L16
- Chain w
- 50S ribosomal protein L27
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