J3_7SSL_004

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SSL_004 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.1454

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7SSL|1|1|C|698
7SSL|1|1|A|699
7SSL|1|1|G|700
*
7SSL|1|1|C|732
7SSL|1|1|G|733
7SSL|1|1|A|734
7SSL|1|1|A|735
7SSL|1|1|C|736
*
7SSL|1|1|G|760
7SSL|1|1|A|761
7SSL|1|1|U|762
7SSL|1|1|G|763

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2