J3_7SSL_010

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

7SSL|1|1|U|2334, 7SSL|1|1|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SSL|1|1|C|2295
7SSL|1|1|U|2296
7SSL|1|1|A|2297
7SSL|1|1|A|2298
7SSL|1|1|U|2299
*
7SSL|1|1|A|2317
7SSL|1|1|G|2318
7SSL|1|1|G|2319
7SSL|1|1|U|2320
7SSL|1|1|U|2321
7SSL|1|1|A|2322
7SSL|1|1|G|2323
*
7SSL|1|1|C|2332
7SSL|1|1|A|2333
7SSL|1|1|U|2334
7SSL|1|1|A|2335
7SSL|1|1|A|2336
7SSL|1|1|G|2337

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain e

50S ribosomal protein L5

Chain o

50S ribosomal protein L18

Chain w

50S ribosomal protein L27