3D structure

PDB id
7SSL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGG*CUUG*CG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7SSL_016 not in the Motif Atlas
Homologous match to J3_6CZR_016
Geometric discrepancy: 0.2444
The information below is about J3_6CZR_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_56052.4
Basepair signature
cWW-F-cWW-cWW-F
Number of instances in this motif group
6

Unit IDs

7SSL|1|3|C|586
7SSL|1|3|G|587
7SSL|1|3|G|588
*
7SSL|1|3|C|651
7SSL|1|3|U|652
7SSL|1|3|U|653
7SSL|1|3|G|654
*
7SSL|1|3|C|754
7SSL|1|3|G|755

Current chains

Chain 3
16S rRNA

Nearby chains

Chain M
30S ribosomal protein S8
Chain Q
30S ribosomal protein S12
Chain T
30S ribosomal protein S15
Chain V
30S ribosomal protein S17

Coloring options:


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