J3_7SSO_015

3D structure

PDB id

7SSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SSO_015 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.1385

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7SSO|1|3|G|46
7SSO|1|3|C|47
*
7SSO|1|3|G|361
7SSO|1|3|G|362
7SSO|1|3|A|363
7SSO|1|3|A|364
7SSO|1|3|U|365
7SSO|1|3|A|366
7SSO|1|3|U|367
*
7SSO|1|3|A|393
7SSO|1|3|G|394
7SSO|1|3|C|395

Current chains

Chain 3

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S12

Chain U

30S ribosomal protein S16