J3_7SSO_020

3D structure

PDB id

7SSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SSO_020 not in the Motif Atlas

Homologous match to J3_5J7L_005

Geometric discrepancy: 0.1152

The information below is about J3_5J7L_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7SSO|1|3|U|943
7SSO|1|3|G|944
7SSO|1|3|G|945
7SSO|1|3|A|946
*
7SSO|1|3|U|1235
7SSO|1|3|A|1236
7SSO|1|3|C|1237
*
7SSO|1|3|G|1337
7SSO|1|3|G|1338
7SSO|1|3|A|1339
7SSO|1|3|A|1340

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain N

30S ribosomal protein S9

Chain R

30S ribosomal protein S13