J3_7SSW_003

3D structure

PDB id

7SSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G dissociated (Structure VI)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7SSW|1|1|U|686, 7SSW|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SSW_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.2031

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7SSW|1|1|U|683
7SSW|1|1|G|684
7SSW|1|1|A|685
7SSW|1|1|U|686
7SSW|1|1|C|687
7SSW|1|1|U|688
7SSW|1|1|A|689
*
7SSW|1|1|U|773
7SSW|1|1|G|774
7SSW|1|1|G|775
*
7SSW|1|1|C|791
7SSW|1|1|A|792
7SSW|1|1|A|793
7SSW|1|1|A|794

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2