3D structure

PDB id
7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AC*GAUAAGC*GAUUU
Length
14 nucleotides
Bulged bases
7ST7|1|1|A|74
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7ST7_002 not in the Motif Atlas
Homologous match to J3_5J7L_037
Geometric discrepancy: 0.1187
The information below is about J3_5J7L_037
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_35667.2
Basepair signature
cWW-cWW-F-F-F-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

7ST7|1|1|A|56
7ST7|1|1|C|57
*
7ST7|1|1|G|70
7ST7|1|1|A|71
7ST7|1|1|U|72
7ST7|1|1|A|73
7ST7|1|1|A|74
7ST7|1|1|G|75
7ST7|1|1|C|76
*
7ST7|1|1|G|110
7ST7|1|1|A|111
7ST7|1|1|U|112
7ST7|1|1|U|113
7ST7|1|1|U|114

Current chains

Chain 1
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L34
Chain t
50S ribosomal protein L23
Chain y
50S ribosomal protein L29

Coloring options:


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