J3_7ST7_009
3D structure
- PDB id
- 7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 7ST7|1|1|U|2334, 7ST7|1|1|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ST7_009 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.112
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
7ST7|1|1|C|2295
7ST7|1|1|U|2296
7ST7|1|1|A|2297
7ST7|1|1|A|2298
7ST7|1|1|U|2299
*
7ST7|1|1|A|2317
7ST7|1|1|G|2318
7ST7|1|1|G|2319
7ST7|1|1|U|2320
7ST7|1|1|U|2321
7ST7|1|1|A|2322
7ST7|1|1|G|2323
*
7ST7|1|1|C|2332
7ST7|1|1|A|2333
7ST7|1|1|U|2334
7ST7|1|1|A|2335
7ST7|1|1|A|2336
7ST7|1|1|G|2337
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain e
- 50S ribosomal protein L5
- Chain o
- 50S ribosomal protein L18
- Chain w
- 50S ribosomal protein L27
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