J3_7ST7_028
3D structure
- PDB id
- 7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAAG*CGCGAUACAG*CGUAC
- Length
- 20 nucleotides
- Bulged bases
- 7ST7|1|1|U|321, 7ST7|1|1|C|323
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ST7_028 not in the Motif Atlas
- Homologous match to J3_5J7L_068
- Geometric discrepancy: 0.1471
- The information below is about J3_5J7L_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46299.2
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
7ST7|1|1|G|297
7ST7|1|1|G|298
7ST7|1|1|A|299
7ST7|1|1|A|300
7ST7|1|1|G|301
*
7ST7|1|1|C|316
7ST7|1|1|G|317
7ST7|1|1|C|318
7ST7|1|1|G|319
7ST7|1|1|A|320
7ST7|1|1|U|321
7ST7|1|1|A|322
7ST7|1|1|C|323
7ST7|1|1|A|324
7ST7|1|1|G|325
*
7ST7|1|1|C|337
7ST7|1|1|G|338
7ST7|1|1|U|339
7ST7|1|1|A|340
7ST7|1|1|C|341
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L4
- Chain u
- 50S ribosomal protein L24
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