J3_7SYG_003

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYG_003 not in the Motif Atlas

Homologous match to J3_8C3A_035

Geometric discrepancy: 0.3375

The information below is about J3_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_00811.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

7SYG|1|2|A|816
7SYG|1|2|G|817
7SYG|1|2|A|818
7SYG|1|2|G|819
*
7SYG|1|2|C|829
7SYG|1|2|A|830
7SYG|1|2|G|831
*
7SYG|1|2|C|843
7SYG|1|2|U|844
7SYG|1|2|G|845
7SYG|1|2|G|846
7SYG|1|2|A|847
7SYG|1|2|U|848

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain K

uS4

Chain Z

40S ribosomal protein S24