J3_7SYG_008

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUUAAUUUG*CGGGAAACCUCAC*GGCUG

Length

27 nucleotides

Bulged bases

7SYG|1|2|G|1256, 7SYG|1|2|A|1258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYG|1|2|C|1237
7SYG|1|2|U|1238
7SYG|1|2|U|1239
7SYG|1|2|A|1240
7SYG|1|2|A|1241
7SYG|1|2|U|1242
7SYG|1|2|U|1243
7SYG|1|2|U|1244
7SYG|1|2|G|1245
*
7SYG|1|2|C|1254
7SYG|1|2|G|1255
7SYG|1|2|G|1256
7SYG|1|2|G|1257
7SYG|1|2|A|1258
7SYG|1|2|A|1259
7SYG|1|2|A|1260
7SYG|1|2|C|1261
7SYG|1|2|C|1262
7SYG|1|2|U|1263
7SYG|1|2|C|1264
7SYG|1|2|A|1265
7SYG|1|2|C|1266
*
7SYG|1|2|G|1516
7SYG|1|2|G|1517
7SYG|1|2|C|1518
7SYG|1|2|U|1519
7SYG|1|2|G|1520

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain Q

uS19

Chain R

uS9

Chain T

uS13

Chain V

uS10

Chain e

eS29