J3_7SYK_011

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUGGC*GGACAAG*CCCGAGAUUG

Length

22 nucleotides

Bulged bases

7SYK|1|2|U|1477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYK|1|2|C|1391
7SYK|1|2|U|1392
7SYK|1|2|G|1393
7SYK|1|2|G|1394
7SYK|1|2|C|1395
*
7SYK|1|2|G|1450
7SYK|1|2|G|1451
7SYK|1|2|A|1452
7SYK|1|2|C|1453
7SYK|1|2|A|1454
7SYK|1|2|A|1455
7SYK|1|2|G|1456
*
7SYK|1|2|C|1470
7SYK|1|2|C|1471
7SYK|1|2|C|1472
7SYK|1|2|G|1473
7SYK|1|2|A|1474
7SYK|1|2|G|1475
7SYK|1|2|A|1476
7SYK|1|2|U|1477
7SYK|1|2|U|1478
7SYK|1|2|G|1479

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain d

eS28

Chain e

eS29

Chain h

RACK1