J3_7SYK_013

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAAAG*CGCAAAU*AGUGACG

Length

19 nucleotides

Bulged bases

7SYK|1|2|C|483, 7SYK|1|2|A|484, 7SYK|1|2|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYK|1|2|C|37
7SYK|1|2|A|38
7SYK|1|2|A|39
7SYK|1|2|A|40
7SYK|1|2|G|41
*
7SYK|1|2|C|481
7SYK|1|2|G|482
7SYK|1|2|C|483
7SYK|1|2|A|484
7SYK|1|2|A|485
7SYK|1|2|A|486
7SYK|1|2|U|487
*
7SYK|1|2|A|512
7SYK|1|2|G|513
7SYK|1|2|U|514
7SYK|1|2|G|515
7SYK|1|2|A|516
7SYK|1|2|C|517
7SYK|1|2|G|518

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain K

uS4

Chain Y

uS12