J3_7SYK_014

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGGA*UUAAGAG*CAUUA

Length

16 nucleotides

Bulged bases

7SYK|1|2|G|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYK|1|2|U|682
7SYK|1|2|G|683
7SYK|1|2|G|684
7SYK|1|2|A|685
*
7SYK|1|2|U|917
7SYK|1|2|U|918
7SYK|1|2|A|919
7SYK|1|2|A|920
7SYK|1|2|G|921
7SYK|1|2|A|922
7SYK|1|2|G|923
*
7SYK|1|2|C|1019
7SYK|1|2|A|1020
7SYK|1|2|U|1021
7SYK|1|2|U|1022
7SYK|1|2|A|1023

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S7

Chain M

uS17

Chain O

uS15

Chain X

uS8

Chain Y

uS12

Chain c

eS27