J3_7SYK_016

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UCUUAGU*ACGAGAC*GCAAUAA

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYK|1|2|U|1340
7SYK|1|2|C|1341
7SYK|1|2|U|1342
7SYK|1|2|U|1343
7SYK|1|2|A|1344
7SYK|1|2|G|1345
7SYK|1|2|U|1346
*
7SYK|1|2|A|1383
7SYK|1|2|C|1384
7SYK|1|2|G|1385
7SYK|1|2|A|1386
7SYK|1|2|G|1387
7SYK|1|2|A|1388
7SYK|1|2|C|1389
*
7SYK|1|2|G|1481
7SYK|1|2|C|1482
7SYK|1|2|A|1483
7SYK|1|2|A|1484
7SYK|1|2|U|1485
7SYK|1|2|A|1486
7SYK|1|2|A|1487

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5 (S2)

Chain E

uS3

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain e

eS29