J3_7SYL_008

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUUAAUUUG*CGGGAAACCUCAC*GGCUG

Length

27 nucleotides

Bulged bases

7SYL|1|2|G|1256, 7SYL|1|2|A|1258, 7SYL|1|2|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYL|1|2|C|1237
7SYL|1|2|U|1238
7SYL|1|2|U|1239
7SYL|1|2|A|1240
7SYL|1|2|A|1241
7SYL|1|2|U|1242
7SYL|1|2|U|1243
7SYL|1|2|U|1244
7SYL|1|2|G|1245
*
7SYL|1|2|C|1254
7SYL|1|2|G|1255
7SYL|1|2|G|1256
7SYL|1|2|G|1257
7SYL|1|2|A|1258
7SYL|1|2|A|1259
7SYL|1|2|A|1260
7SYL|1|2|C|1261
7SYL|1|2|C|1262
7SYL|1|2|U|1263
7SYL|1|2|C|1264
7SYL|1|2|A|1265
7SYL|1|2|C|1266
*
7SYL|1|2|G|1516
7SYL|1|2|G|1517
7SYL|1|2|C|1518
7SYL|1|2|U|1519
7SYL|1|2|G|1520

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain Q

uS19

Chain R

uS9

Chain T

uS13

Chain V

uS10

Chain e

eS29