J3_7SYL_010

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UCUUAG*CGAGAC*GCAAUAA

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYL|1|2|U|1340
7SYL|1|2|C|1341
7SYL|1|2|U|1342
7SYL|1|2|U|1343
7SYL|1|2|A|1344
7SYL|1|2|G|1345
*
7SYL|1|2|C|1384
7SYL|1|2|G|1385
7SYL|1|2|A|1386
7SYL|1|2|G|1387
7SYL|1|2|A|1388
7SYL|1|2|C|1389
*
7SYL|1|2|G|1481
7SYL|1|2|C|1482
7SYL|1|2|A|1483
7SYL|1|2|A|1484
7SYL|1|2|U|1485
7SYL|1|2|A|1486
7SYL|1|2|A|1487

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5 (S2)

Chain E

uS3

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain e

eS29