J3_7SYL_011

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGGA*UUUGUC*GAUAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYL|1|2|U|1350
7SYL|1|2|G|1351
7SYL|1|2|G|1352
7SYL|1|2|A|1353
*
7SYL|1|2|U|1358
7SYL|1|2|U|1359
7SYL|1|2|U|1360
7SYL|1|2|G|1361
7SYL|1|2|U|1362
7SYL|1|2|C|1363
*
7SYL|1|2|G|1375
7SYL|1|2|A|1376
7SYL|1|2|U|1377
7SYL|1|2|A|1378
7SYL|1|2|A|1379

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

40S ribosomal protein SA

Chain D

uS5 (S2)

Chain S

eS17

Chain W

40S ribosomal protein S21