J3_7SYL_012

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

7SYL|1|2|U|1535, 7SYL|1|2|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYL|1|2|C|1532
7SYL|1|2|A|1533
7SYL|1|2|C|1534
7SYL|1|2|U|1535
7SYL|1|2|G|1536
*
7SYL|1|2|C|1597
7SYL|1|2|G|1598
7SYL|1|2|U|1599
7SYL|1|2|G|1600
7SYL|1|2|A|1601
7SYL|1|2|U|1602
7SYL|1|2|G|1603
7SYL|1|2|G|1604
*
7SYL|1|2|C|1635
7SYL|1|2|G|1636
7SYL|1|2|A|1637
7SYL|1|2|G|1638

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain T

uS13

Chain U

eS19

Chain a

eS25 (S25)