J3_7SYL_016

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAGAG*UACUGCCUGAUAGGGUG*CC

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYL|1|z|G|133
7SYL|1|z|A|134
7SYL|1|z|G|135
7SYL|1|z|A|136
7SYL|1|z|G|137
*
7SYL|1|z|U|287
7SYL|1|z|A|288
7SYL|1|z|C|289
7SYL|1|z|U|290
7SYL|1|z|G|291
7SYL|1|z|C|292
7SYL|1|z|C|293
7SYL|1|z|U|294
7SYL|1|z|G|295
7SYL|1|z|A|296
7SYL|1|z|U|297
7SYL|1|z|A|298
7SYL|1|z|G|299
7SYL|1|z|G|300
7SYL|1|z|G|301
7SYL|1|z|U|302
7SYL|1|z|G|303
*
7SYL|1|z|C|314
7SYL|1|z|C|315

Current chains

Chain z

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain C

eS1

Chain S

eS17

Chain b

eS26 (S26)