J3_7SYL_017

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGG*UAAGA*UA

Length

10 nucleotides

Bulged bases

7SYL|1|2|G|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYL_017 not in the Motif Atlas

Geometric match to J3_8P9A_071

Geometric discrepancy: 0.2217

The information below is about J3_8P9A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7SYL|1|2|U|682
7SYL|1|2|G|683
7SYL|1|2|G|684
*
7SYL|1|2|U|918
7SYL|1|2|A|919
7SYL|1|2|A|920
7SYL|1|2|G|921
7SYL|1|2|A|922
*
7SYL|1|2|U|1022
7SYL|1|2|A|1023

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S7

Chain M

uS17

Chain O

uS15

Chain X

uS8

Chain Y

uS12

Chain c

eS27