J3_7SYM_011

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UGGA*UUGUC*GAUAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYM|1|2|U|1350
7SYM|1|2|G|1351
7SYM|1|2|G|1352
7SYM|1|2|A|1353
*
7SYM|1|2|U|1359
7SYM|1|2|U|1360
7SYM|1|2|G|1361
7SYM|1|2|U|1362
7SYM|1|2|C|1363
*
7SYM|1|2|G|1375
7SYM|1|2|A|1376
7SYM|1|2|U|1377
7SYM|1|2|A|1378
7SYM|1|2|A|1379

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

40S ribosomal protein SA

Chain D

40S ribosomal protein S2

Chain S

eS17

Chain W

40S ribosomal protein S21