J3_7SYM_013

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CAAAG*CGCAAAU*AGUGACG

Length

19 nucleotides

Bulged bases

7SYM|1|2|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYM|1|2|C|37
7SYM|1|2|A|38
7SYM|1|2|A|39
7SYM|1|2|A|40
7SYM|1|2|G|41
*
7SYM|1|2|C|481
7SYM|1|2|G|482
7SYM|1|2|C|483
7SYM|1|2|A|484
7SYM|1|2|A|485
7SYM|1|2|A|486
7SYM|1|2|U|487
*
7SYM|1|2|A|512
7SYM|1|2|G|513
7SYM|1|2|U|514
7SYM|1|2|G|515
7SYM|1|2|A|516
7SYM|1|2|C|517
7SYM|1|2|G|518

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain K

uS4

Chain Y

uS12