J3_7SYM_017

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GUUCUUAGUU*AACGAGAC*GCAAUAAC

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYM|1|2|G|1338
7SYM|1|2|U|1339
7SYM|1|2|U|1340
7SYM|1|2|C|1341
7SYM|1|2|U|1342
7SYM|1|2|U|1343
7SYM|1|2|A|1344
7SYM|1|2|G|1345
7SYM|1|2|U|1346
7SYM|1|2|U|1347
*
7SYM|1|2|A|1382
7SYM|1|2|A|1383
7SYM|1|2|C|1384
7SYM|1|2|G|1385
7SYM|1|2|A|1386
7SYM|1|2|G|1387
7SYM|1|2|A|1388
7SYM|1|2|C|1389
*
7SYM|1|2|G|1481
7SYM|1|2|C|1482
7SYM|1|2|A|1483
7SYM|1|2|A|1484
7SYM|1|2|U|1485
7SYM|1|2|A|1486
7SYM|1|2|A|1487
7SYM|1|2|C|1488

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S2

Chain E

uS3

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain e

eS29