J3_7SYM_019

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GAGAG*UACUGCCUGAUAGGGUG*CC

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYM|1|z|G|133
7SYM|1|z|A|134
7SYM|1|z|G|135
7SYM|1|z|A|136
7SYM|1|z|G|137
*
7SYM|1|z|U|287
7SYM|1|z|A|288
7SYM|1|z|C|289
7SYM|1|z|U|290
7SYM|1|z|G|291
7SYM|1|z|C|292
7SYM|1|z|C|293
7SYM|1|z|U|294
7SYM|1|z|G|295
7SYM|1|z|A|296
7SYM|1|z|U|297
7SYM|1|z|A|298
7SYM|1|z|G|299
7SYM|1|z|G|300
7SYM|1|z|G|301
7SYM|1|z|U|302
7SYM|1|z|G|303
*
7SYM|1|z|C|314
7SYM|1|z|C|315

Current chains

Chain z

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain C

40S ribosomal protein S3a