J3_7SYN_014

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUUCUUAGUU*AACGAGAC*GCAAUAAC

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYN|1|2|G|1338
7SYN|1|2|U|1339
7SYN|1|2|U|1340
7SYN|1|2|C|1341
7SYN|1|2|U|1342
7SYN|1|2|U|1343
7SYN|1|2|A|1344
7SYN|1|2|G|1345
7SYN|1|2|U|1346
7SYN|1|2|U|1347
*
7SYN|1|2|A|1382
7SYN|1|2|A|1383
7SYN|1|2|C|1384
7SYN|1|2|G|1385
7SYN|1|2|A|1386
7SYN|1|2|G|1387
7SYN|1|2|A|1388
7SYN|1|2|C|1389
*
7SYN|1|2|G|1481
7SYN|1|2|C|1482
7SYN|1|2|A|1483
7SYN|1|2|A|1484
7SYN|1|2|U|1485
7SYN|1|2|A|1486
7SYN|1|2|A|1487
7SYN|1|2|C|1488

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S2

Chain E

uS3

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain e

uS14